CABS-dock: d7550b08e29368e

Project name: d7550b08e29368e

Status: done

submitted: 2026-04-20 01:42:16, status changed: 2026-04-20 08:59:29

Project settings

Protein sequence(s)	GEAPNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLMDEEDMDDVVDADEYLIP input pdb
Peptide sequence	AEGIFGGFMLGVKSISGMAF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCEECCCEEEECCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.8272	3.02175	18.684	72
cluster_2.pdb ( medoid)	22.6269	5.17083	28.5044	117
cluster_3.pdb ( medoid)	21.5409	10.3524	54.9403	223
cluster_4.pdb ( medoid)	15.4181	10.8963	33.5466	168
cluster_5.pdb ( medoid)	6.60025	6.36339	24.4947	42
cluster_6.pdb ( medoid)	6.3954	9.69446	31.4668	62
cluster_7.pdb ( medoid)	6.20305	14.6702	39.1655	91
cluster_8.pdb ( medoid)	4.93465	21.6834	44.504	107
cluster_9.pdb ( medoid)	4.84123	17.351	42.4456	84
cluster_10.pdb ( medoid)	3.36981	10.0896	23.9741	34