CABS-dock: mmp3

Project name: mmp3

Status: done

submitted: 2026-03-15 08:20:31, status changed: 2026-03-15 20:50:32

Project settings

Protein sequence(s)	ECGWRIGEAGTDPNLNHQQFRAKILSIWEECECGWRIGEAGTDPNLNHQQFRAKILSIWEECPSDKPVAHVVANPQAEGQLQWLNRRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSYQTKVNLLSAIKSPCQAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIALSDKPVAHVVANPQAEGQLQWLNRRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSYQTKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIAL input pdb
Peptide sequence	GPAGPAGPAGARGPAGPQ
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	43.6498	2.31387	18.8266	101
cluster_2.pdb ( medoid)	30.5505	8.70689	19.4565	266
cluster_3.pdb ( medoid)	28.4272	2.14583	19.4789	61
cluster_4.pdb ( medoid)	26.664	1.65016	17.8376	44
cluster_5.pdb ( medoid)	17.6629	9.34161	29.0165	165
cluster_6.pdb ( medoid)	13.9729	6.94203	18.521	97
cluster_7.pdb ( medoid)	10.7841	7.9747	25.0845	86
cluster_8.pdb ( medoid)	7.87587	12.824	29.2802	101
cluster_9.pdb ( medoid)	6.0888	9.36145	32.0501	57
cluster_10.pdb ( medoid)	4.18103	5.26187	21.9336	22