CABS-dock: DGR

Project name: DGR

Status: done

submitted: 2026-04-18 14:14:19, status changed: 2026-04-18 18:27:12

Project settings

Protein sequence(s)	AFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNANPPTFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPESRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRVTE input pdb
Peptide sequence	CDGRPDRAC
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	65.7434	1.88612	25.7871	124
cluster_2.pdb ( medoid)	26.8049	5.33485	39.1022	143
cluster_3.pdb ( medoid)	25.1236	6.08989	13.6147	153
cluster_4.pdb ( medoid)	17.4505	6.13162	34.3592	107
cluster_5.pdb ( medoid)	15.3288	7.11078	25.9394	109
cluster_6.pdb ( medoid)	13.4917	6.37428	30.7681	86
cluster_7.pdb ( medoid)	12.5279	5.66736	17.279	71
cluster_8.pdb ( medoid)	7.72745	10.0939	32.1745	78
cluster_9.pdb ( medoid)	7.295	8.49898	36.5608	62
cluster_10.pdb ( medoid)	4.53903	14.7609	33.3032	67