CABS-dock: da088fb9f5c0177

Project name: da088fb9f5c0177

Status: done

submitted: 2026-01-13 14:49:43, status changed: 2026-01-13 19:01:28

Project settings

Protein sequence(s)	MGSGPIDPKELLKGLDSFLTRDGEVKSVDGIAKIFSLMKEARKMVSRCTYLNIILQTRAPEVLVKFIDVGGYKLLNSWLTYSKTTNNIPLLQQILLTLQHLPLTVDHLKQNNTAKLVKQLSKSSEDEELRKLASVLVSDWMAVIRSQS input pdb
Peptide sequence	RLSAREQWEQFLKICYNM
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	50.7149	0.650696	2.68994	33
cluster_2.pdb ( medoid)	28.8394	3.9876	13.3043	115
cluster_3.pdb ( medoid)	23.9214	5.47626	13.9646	131
cluster_4.pdb ( medoid)	23.2922	7.25565	30.0008	169
cluster_5.pdb ( medoid)	22.4664	3.42733	10.6668	77
cluster_6.pdb ( medoid)	20.6653	5.0326	13.3003	104
cluster_7.pdb ( medoid)	18.8128	5.6876	11.981	107
cluster_8.pdb ( medoid)	16.8158	7.84974	30.4669	132
cluster_9.pdb ( medoid)	11.3003	7.87589	15.2166	89
cluster_10.pdb ( medoid)	7.58321	5.67042	12.1623	43