CABS-dock: salida

Project name: salida

Status: done

submitted: 2026-05-10 05:58:57, status changed: 2026-05-10 07:49:40

Project settings

Protein sequence(s)	WNPPTFSPALLVVTEGDNATFTSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFMSVVRARRNDSGTYLGAISLAPKAQIKESLRAELRVTE input pdb
Peptide sequence	FNYSGSNYYYKDF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	45.811	3.38347	12.4083	155
cluster_2.pdb ( medoid)	28.0715	3.13485	13.5863	88
cluster_3.pdb ( medoid)	24.2508	7.87601	34.3005	191
cluster_4.pdb ( medoid)	11.5958	5.1743	16.7355	60
cluster_5.pdb ( medoid)	10.1071	6.13431	12.1749	62
cluster_6.pdb ( medoid)	10.0018	8.79842	30.4105	88
cluster_7.pdb ( medoid)	9.77092	15.454	42.8668	151
cluster_8.pdb ( medoid)	8.34909	12.2169	30.2807	102
cluster_9.pdb ( medoid)	5.21375	12.2752	29.0448	64
cluster_10.pdb ( medoid)	3.96748	9.82993	26.1545	39