CABS-dock: dbcee207cce0210

Project name: dbcee207cce0210

Status: done

submitted: 2025-04-15 09:42:48, status changed: 2025-04-15 11:10:58

Project settings

Protein sequence(s)	RLKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR input pdb
Peptide sequence	LRDIRIADPF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	47.0565	4.35647	32.5123	205
cluster_2.pdb ( medoid)	44.7902	3.99641	11.2428	179
cluster_3.pdb ( medoid)	41.8044	5.11907	15.8749	214
cluster_4.pdb ( medoid)	21.9325	5.19776	12.4599	114
cluster_5.pdb ( medoid)	12.7493	3.76491	16.0811	48
cluster_6.pdb ( medoid)	10.0794	5.15904	12.4521	52
cluster_7.pdb ( medoid)	7.19843	5.69569	14.2531	41
cluster_8.pdb ( medoid)	4.99448	8.40929	34.9163	42
cluster_9.pdb ( medoid)	4.79833	11.6707	23.7649	56
cluster_10.pdb ( medoid)	3.59833	13.6174	30.8134	49