CABS-dock: dbf11552fc0ec1

Project name: dbf11552fc0ec1

Status: done

submitted: 2026-03-19 17:24:13, status changed: 2026-03-19 20:51:15

Project settings

Protein sequence(s)	MITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGINFNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM input pdb
Peptide sequence	QVQLVESGGGLVQPGNSLTLSCVT
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEEECCCEECCCCCEEEEEEC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	26.5077	4.79105	29.5452	127
cluster_2.pdb ( medoid)	22.1482	5.77925	26.6049	128
cluster_3.pdb ( medoid)	20.8127	7.1591	21.0004	149
cluster_4.pdb ( medoid)	18.3836	5.43962	16.0036	100
cluster_5.pdb ( medoid)	15.1522	8.3816	21.9088	127
cluster_6.pdb ( medoid)	7.29141	16.732	33.6885	122
cluster_7.pdb ( medoid)	7.08031	12.5701	34.7846	89
cluster_8.pdb ( medoid)	4.51729	17.4884	35.8403	79
cluster_9.pdb ( medoid)	4.21899	12.5622	24.2776	53
cluster_10.pdb ( medoid)	2.47319	10.5128	18.95	26