CABS-dock: dc395a14b004bf3

Project name: dc395a14b004bf3

Status: done

submitted: 2026-06-17 04:51:48, status changed: 2026-06-17 17:16:13

Project settings

Protein sequence(s)	MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDKVSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGVERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVGEDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHVPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKG input pdb
Peptide sequence	FLPPLQPAVMVPFLQP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCEECCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	33.1265	6.76195	20.0691	224
cluster_2.pdb ( medoid)	16.0343	6.98503	17.3553	112
cluster_3.pdb ( medoid)	14.4483	8.23624	29.398	119
cluster_4.pdb ( medoid)	13.6457	11.2123	27.0139	153
cluster_5.pdb ( medoid)	11.1593	11.6495	30.5982	130
cluster_6.pdb ( medoid)	7.61183	9.59034	25.3866	73
cluster_7.pdb ( medoid)	7.16319	10.4702	25.6248	75
cluster_8.pdb ( medoid)	5.51868	6.7045	25.4529	37
cluster_9.pdb ( medoid)	3.91737	8.6793	19.7188	34
cluster_10.pdb ( medoid)	3.39236	12.6755	34.0638	43