CABS-dock: dc5bac99468b15a

Project name: dc5bac99468b15a

Status: done

submitted: 2025-06-23 11:04:33, status changed: 2025-06-23 13:33:22

Project settings

Protein sequence(s)	MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK input pdb
Peptide sequence	KRGRKMDLRGLTARKGK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCHHHCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	31.5549	7.54241	20.4882	238
cluster_2.pdb ( medoid)	22.7401	6.68422	20.1892	152
cluster_3.pdb ( medoid)	20.2611	6.31754	16.239	128
cluster_4.pdb ( medoid)	18.8496	4.45633	21.5938	84
cluster_5.pdb ( medoid)	17.5988	5.9095	15.1985	104
cluster_6.pdb ( medoid)	16.5151	4.05688	14.3155	67
cluster_7.pdb ( medoid)	8.53695	10.7767	22.1376	92
cluster_8.pdb ( medoid)	7.37972	5.28475	19.3315	39
cluster_9.pdb ( medoid)	7.3732	9.62947	27.5845	71
cluster_10.pdb ( medoid)	3.92182	6.37459	11.2285	25