CABS-dock: dd2646dabf8f406

Project name: dd2646dabf8f406

Status: done

submitted: 2026-03-09 08:47:21, status changed: 2026-03-09 14:36:53

Project settings

Protein sequence(s)	VKDFLSQLRSSNRRFSIPESGQGGTEMDGFRRTIENQHSRNDVMVSEWLNKLNLEEPPSSVPKKCPSLTKRSRAQEEQVPQAWTAGTSSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPGPRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNYLTMQQTTALPTWGLAPSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGK input pdb
Peptide sequence	VQLFGDSNY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	22.3822	6.29964	30.4936	141
cluster_2.pdb ( medoid)	21.6279	6.42687	21.9093	139
cluster_3.pdb ( medoid)	16.2943	7.97825	47.3054	130
cluster_4.pdb ( medoid)	14.629	9.22822	32.6857	135
cluster_5.pdb ( medoid)	8.84923	12.6565	42.6886	112
cluster_6.pdb ( medoid)	6.14909	13.6606	26.8475	84
cluster_7.pdb ( medoid)	6.03512	10.2732	23.3983	62
cluster_8.pdb ( medoid)	4.33104	11.5446	22.61	50
cluster_9.pdb ( medoid)	4.26854	16.8676	63.4089	72
cluster_10.pdb ( medoid)	4.14109	18.1112	40.3982	75