CABS-dock: dd30722aba7ae8e

Project name: dd30722aba7ae8e

Status: done

submitted: 2026-02-13 08:02:12, status changed: 2026-02-13 15:20:29

Project settings

Protein sequence(s)	FARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV input pdb
Peptide sequence	LVSVWIISAALSLKNKVAYRNAKLVSKLFR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHHHHHHCCCHHHHHHHHHHHHHCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	53.7143	1.89893	9.4106	102
cluster_2.pdb ( medoid)	42.1014	2.66024	38.0418	112
cluster_3.pdb ( medoid)	15.5833	13.2193	37.1825	206
cluster_4.pdb ( medoid)	14.8132	9.85607	36.3389	146
cluster_5.pdb ( medoid)	14.3597	3.69089	18.0587	53
cluster_6.pdb ( medoid)	14.0991	3.54633	19.8629	50
cluster_7.pdb ( medoid)	10.4611	11.1842	35.6619	117
cluster_8.pdb ( medoid)	5.24478	8.96128	34.0764	47
cluster_9.pdb ( medoid)	4.83757	21.2917	38.1318	103
cluster_10.pdb ( medoid)	3.95692	16.1742	46.4513	64