CABS-dock: A5HTU8-PEP5

Project name: A5HTU8-PEP5

Status: done

submitted: 2026-06-12 16:26:15, status changed: 2026-06-12 21:43:34

Project settings

Protein sequence(s)	GSHSMRYFSTAVSRPGLGEPRYLEVGYVDDTQFVRFDSDAPDPKMEQRAPWMEQVGPEYWDQETRRAKGNAQTFRVSLNNLRGYYNQSEAGSHTLQWMYGCDVGTDGRLLRGFMQYGYDGRDYIALNEDLRSWTAAETEAQITKRKWEKEGAAEARRNYLEGRCVEWLHRYLEIGKDTLQRSDPPKAHVTHHPISDREVTLRCWALGFYPEEISLTWQRSGEDQTQDMELVETRPSGDGTFQKWVALVVPSGEEQRYTCHVQHEGLQEPLTLRWEP input pdb
Peptide sequence	SAPPME
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	80.1298	1.51005	5.32342	121
cluster_2.pdb ( medoid)	56.8285	2.23479	22.5132	127
cluster_3.pdb ( medoid)	37.2446	4.08112	20.66	152
cluster_4.pdb ( medoid)	12.9797	7.39615	30.5466	96
cluster_5.pdb ( medoid)	12.2624	7.82883	24.5428	96
cluster_6.pdb ( medoid)	10.5132	6.75342	12.9249	71
cluster_7.pdb ( medoid)	10.0727	11.6155	34.5298	117
cluster_8.pdb ( medoid)	9.83752	10.5718	35.0478	104
cluster_9.pdb ( medoid)	6.70149	9.84856	24.4686	66
cluster_10.pdb ( medoid)	6.30662	7.92818	31.6724	50