CABS-dock: dd6e2d84da276ce

Project name: dd6e2d84da276ce

Status: done

submitted: 2026-01-22 15:50:06, status changed: 2026-01-22 18:12:38

Project settings

Protein sequence(s)	MVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPAMVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPA input pdb
Peptide sequence	VVGRIQCRSNFV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEEEECCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	48.0259	2.1655	16.8973	104
cluster_2.pdb ( medoid)	32.6046	5.306	31.75	173
cluster_3.pdb ( medoid)	23.0515	8.80636	28.8995	203
cluster_4.pdb ( medoid)	17.495	5.54443	18.6203	97
cluster_5.pdb ( medoid)	17.0261	4.9336	15.7053	84
cluster_6.pdb ( medoid)	11.4112	9.2891	29.129	106
cluster_7.pdb ( medoid)	7.58538	5.2733	12.1499	40
cluster_8.pdb ( medoid)	6.15698	11.5316	29.1476	71
cluster_9.pdb ( medoid)	4.72174	13.1307	27.6932	62
cluster_10.pdb ( medoid)	4.59973	13.0442	30.9881	60