CABS-dock: dd90114fb86d2d5

Project name: dd90114fb86d2d5

Status: done

submitted: 2025-04-16 12:53:18, status changed: 2025-04-17 02:34:16

Project settings

Protein sequence(s)	SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS input pdb
Peptide sequence	EEEDEFYQTTYGGFTEESGDDEYQGD
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHHCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	35.2639	4.73572	11.4585	167
cluster_2.pdb ( medoid)	34.8465	3.38628	23.0702	118
cluster_3.pdb ( medoid)	15.3945	6.6907	22.3343	103
cluster_4.pdb ( medoid)	15.1323	8.1944	32.8648	124
cluster_5.pdb ( medoid)	12.0245	8.15006	30.5012	98
cluster_6.pdb ( medoid)	10.1676	8.75331	22.651	89
cluster_7.pdb ( medoid)	9.88347	11.3321	27.0371	112
cluster_8.pdb ( medoid)	8.36582	8.96505	22.0739	75
cluster_9.pdb ( medoid)	6.15007	11.7072	29.3139	72
cluster_10.pdb ( medoid)	3.23289	12.9915	28.4653	42