CABS-dock: de8f0071bb10a3e

Project name: de8f0071bb10a3e

Status: done

submitted: 2026-06-10 09:10:48, status changed: 2026-06-10 19:02:21

Project settings

Protein sequence(s)	MAELQEVQITEEKPLLPGQTPEAAKEAELAARILLDQGQTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSGPPGHTMEVSC input pdb
Peptide sequence	LNLARLAGDEVLEA
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHCHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	34.5397	3.24265	32.0772	112
cluster_2.pdb ( medoid)	31.4909	6.7321	36.4619	212
cluster_3.pdb ( medoid)	15.0671	6.76973	29.0195	102
cluster_4.pdb ( medoid)	14.9292	6.43036	34.1628	96
cluster_5.pdb ( medoid)	12.3018	12.7624	39.0788	157
cluster_6.pdb ( medoid)	8.36766	9.08259	35.1466	76
cluster_7.pdb ( medoid)	7.92522	12.9965	36.9796	103
cluster_8.pdb ( medoid)	6.13359	9.94524	27.1094	61
cluster_9.pdb ( medoid)	3.72343	14.7713	34.6287	55
cluster_10.pdb ( medoid)	1.85132	14.044	29.718	26