CABS-dock: deacbfaae4833de

Project name: deacbfaae4833de

Status: done

submitted: 2026-01-14 18:59:12, status changed: 2026-01-14 20:34:41

Project settings

Protein sequence(s)	PQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIY input pdb
Peptide sequence	TSEEEEELEEEEEEDPE
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHHHHHHCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	31.3585	4.49638	17.1046	141
cluster_2.pdb ( medoid)	29.9233	5.68119	18.6776	170
cluster_3.pdb ( medoid)	21.1611	4.91467	18.7642	104
cluster_4.pdb ( medoid)	19.8066	6.0586	14.0491	120
cluster_5.pdb ( medoid)	18.5958	4.46338	13.4456	83
cluster_6.pdb ( medoid)	17.969	4.78603	15.8912	86
cluster_7.pdb ( medoid)	12.4386	6.51199	13.917	81
cluster_8.pdb ( medoid)	9.64019	7.77993	20.4943	75
cluster_9.pdb ( medoid)	7.89369	8.99452	19.0632	71
cluster_10.pdb ( medoid)	6.24019	11.0573	24.6675	69