CABS-dock: df335869ab4b7e6

Project name: df335869ab4b7e6

Status: done

submitted: 2026-07-09 04:56:28, status changed: 2026-07-09 09:05:35

Project settings

Protein sequence(s)	GSHMMLEADLELERAADVRRWEEQAEISSGSSSPPILSSISIKNEEEEQTLGLLEDGAYRIKQKGILGYSQIGAGVYYKEGTFHTMWHVTRRRGAVLMHKGKRIEPSWADVKKDLISYGGGGWKLEGEWKEGEEVQVLLALEPGKNPRAVQTKPGLFKTNTGTIGAVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVVVTRSGAYYVSAIAN input pdb
Peptide sequence	SGTPFRSSAFHGFE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	47.556	2.16587	22.9468	103
cluster_2.pdb ( medoid)	23.5508	4.45845	17.0589	105
cluster_3.pdb ( medoid)	19.4896	6.5676	24.4699	128
cluster_4.pdb ( medoid)	16.645	7.44968	32.0438	124
cluster_5.pdb ( medoid)	15.788	9.6909	34.0444	153
cluster_6.pdb ( medoid)	14.7269	7.19771	26.0883	106
cluster_7.pdb ( medoid)	7.88142	12.1805	33.7813	96
cluster_8.pdb ( medoid)	7.37288	9.35862	32.4056	69
cluster_9.pdb ( medoid)	6.90237	8.69266	18.3291	60
cluster_10.pdb ( medoid)	3.21005	17.4452	34.069	56