CABS-dock: df476af8279c842

Project name: df476af8279c842

Status: done

submitted: 2026-06-23 21:35:23, status changed: 2026-06-23 23:42:11

Project settings

Protein sequence(s)	AEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKV input pdb
Peptide sequence	AGDWVGWCGGSGAET
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	50.1352	3.09164	11.4802	155
cluster_2.pdb ( medoid)	35.0856	6.95442	34.0699	244
cluster_3.pdb ( medoid)	24.526	3.13953	16.8966	77
cluster_4.pdb ( medoid)	13.9808	4.57771	24.0088	64
cluster_5.pdb ( medoid)	8.35022	15.808	39.1901	132
cluster_6.pdb ( medoid)	7.24201	8.97541	30.6144	65
cluster_7.pdb ( medoid)	6.77752	12.3939	38.6633	84
cluster_8.pdb ( medoid)	5.33308	14.2507	38.5093	76
cluster_9.pdb ( medoid)	5.25876	5.89493	12.7478	31
cluster_10.pdb ( medoid)	4.12716	17.4454	37.0891	72