CABS-dock: df60bdc3809fb04

Project name: df60bdc3809fb04

Status: done

submitted: 2026-06-13 08:48:06, status changed: 2026-06-13 11:31:29

Project settings

Protein sequence(s)	MVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPAMVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPA input pdb
Peptide sequence	RRRVQLFGSNDARRYHHHHHHHHHHH
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEEECCCCHHHHCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.5833	3.73414	19.514	103
cluster_2.pdb ( medoid)	22.21	6.52859	23.078	145
cluster_3.pdb ( medoid)	20.897	5.55102	23.0051	116
cluster_4.pdb ( medoid)	18.5319	5.93572	26.5297	110
cluster_5.pdb ( medoid)	15.7835	11.531	27.7163	182
cluster_6.pdb ( medoid)	9.91327	8.57436	20.7766	85
cluster_7.pdb ( medoid)	8.82484	11.6716	26.3099	103
cluster_8.pdb ( medoid)	5.62529	9.5995	24.664	54
cluster_9.pdb ( medoid)	5.39178	11.128	21.9108	60
cluster_10.pdb ( medoid)	3.52584	11.9121	23.5022	42