CABS-dock: df6e438d7d8dc78

Project name: df6e438d7d8dc78

Status: done

submitted: 2026-07-28 22:46:54, status changed: 2026-07-29 02:50:28

Project settings

Protein sequence(s)	VGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM input pdb
Peptide sequence	INPEIITRDGFLLLQMDFVK
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHCCCCCCEEEEEEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.5834	6.44522	29.5208	152
cluster_2.pdb ( medoid)	17.7234	6.99641	33.1457	124
cluster_3.pdb ( medoid)	12.4242	9.17566	25.3181	114
cluster_4.pdb ( medoid)	10.8731	10.3006	27.9718	112
cluster_5.pdb ( medoid)	10.1137	11.4696	23.7795	116
cluster_6.pdb ( medoid)	9.97365	9.82589	19.815	98
cluster_7.pdb ( medoid)	8.73847	6.17957	27.7871	54
cluster_8.pdb ( medoid)	8.45988	13.239	38.1391	112
cluster_9.pdb ( medoid)	8.43409	10.4338	32.9703	88
cluster_10.pdb ( medoid)	4.04602	7.41469	25.996	30