CABS-dock: braf_monomer_peptide_9

Project name: braf_monomer_peptide_9_new

Status: done

submitted: 2026-01-16 17:23:31, status changed: 2026-01-17 02:41:53

Project settings

Protein sequence(s)	DWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYKHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRRDLKSNNIFLHEDNNTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAEECLKKKRDERPSFPRILAEIEELARE input pdb
Peptide sequence	LRKTRHVNILLFM
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCEEEEEEC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	55.0703	2.76011	7.86561	152
cluster_2.pdb ( medoid)	25.4655	5.14421	32.1117	131
cluster_3.pdb ( medoid)	21.9908	3.31957	12.7043	73
cluster_4.pdb ( medoid)	20.4898	6.83267	28.9653	140
cluster_5.pdb ( medoid)	19.1509	4.02071	9.8534	77
cluster_6.pdb ( medoid)	17.8199	5.05053	34.0166	90
cluster_7.pdb ( medoid)	9.3936	12.0295	34.0699	113
cluster_8.pdb ( medoid)	8.68704	11.3963	38.8557	99
cluster_9.pdb ( medoid)	6.33009	10.4264	28.218	66
cluster_10.pdb ( medoid)	5.66215	10.4201	39.8078	59