CABS-dock: e03e2a9c652d278

Project name: e03e2a9c652d278

Status: done

submitted: 2025-12-22 08:59:32, status changed: 2025-12-22 11:15:11

Project settings

Protein sequence(s)	MVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPAMVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPA input pdb
Peptide sequence	RRNNVFVQCGSNCR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCEEECCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.3183	1.79536	10.8392	67
cluster_2.pdb ( medoid)	36.9717	3.84077	19.7203	142
cluster_3.pdb ( medoid)	23.3312	7.20064	26.825	168
cluster_4.pdb ( medoid)	20.7434	3.47098	7.55596	72
cluster_5.pdb ( medoid)	15.2232	6.76597	24.7193	103
cluster_6.pdb ( medoid)	15.0068	8.39617	25.6356	126
cluster_7.pdb ( medoid)	11.9648	9.19363	34.4372	110
cluster_8.pdb ( medoid)	10.8209	4.71309	10.5615	51
cluster_9.pdb ( medoid)	9.87842	9.11077	23.5809	90
cluster_10.pdb ( medoid)	9.8013	7.24394	22.0365	71