CABS-dock: RecA-Cs6

Project name: RecA-Cs6

Status: done

submitted: 2026-01-10 14:48:54, status changed: 2026-01-10 18:01:43

Project settings

Protein sequence(s)	EGLPLVGRVAAGEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKKQGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVVIRNGDWL input pdb
Peptide sequence	QAIIHNEKVQAHGKKVL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCHHHHHCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	70.5351	1.3752	2.38999	97
cluster_2.pdb ( medoid)	34.0747	3.08147	26.4528	105
cluster_3.pdb ( medoid)	21.6942	4.79392	22.4277	104
cluster_4.pdb ( medoid)	14.034	8.90696	34.8318	125
cluster_5.pdb ( medoid)	13.7567	9.37723	34.6566	129
cluster_6.pdb ( medoid)	12.3296	7.94835	20.9675	98
cluster_7.pdb ( medoid)	10.5309	12.8195	25.9147	135
cluster_8.pdb ( medoid)	8.09063	9.02278	17.6329	73
cluster_9.pdb ( medoid)	6.91883	13.008	32.0068	90
cluster_10.pdb ( medoid)	4.36634	10.0771	30.9999	44