CABS-dock: e07746b7a4d67e8

Project name: e07746b7a4d67e8

Status: done

submitted: 2026-04-20 01:46:17, status changed: 2026-04-20 08:39:07

Project settings

Protein sequence(s)	GEAPNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLMDEEDMDDVVDADEYLIP input pdb
Peptide sequence	REIDDIVLDNNEEDLDTSDE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCHHHCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	39.566	3.3362	13.4778	132
cluster_2.pdb ( medoid)	22.2191	4.77067	34.0432	106
cluster_3.pdb ( medoid)	19.7612	7.99547	24.5205	158
cluster_4.pdb ( medoid)	17.1506	4.43132	11.2338	76
cluster_5.pdb ( medoid)	15.5301	6.76106	24.5411	105
cluster_6.pdb ( medoid)	15.5095	8.8978	22.0304	138
cluster_7.pdb ( medoid)	14.903	7.11265	23.7022	106
cluster_8.pdb ( medoid)	13.2966	5.18929	18.5724	69
cluster_9.pdb ( medoid)	9.40531	4.57188	17.8517	43
cluster_10.pdb ( medoid)	7.03272	9.5269	20.2392	67