CABS-dock: e07a4b83fcd4fc7

Project name: e07a4b83fcd4fc7

Status: done

submitted: 2026-01-22 13:24:14, status changed: 2026-01-22 14:00:52

Project settings

Protein sequence(s)	PEITLIIFGVIAGVIGTILLISYGIRRL input pdb
Peptide sequence	NGSGKPIDGGPRILP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	21.0656	8.02257	23.388	169
cluster_2.pdb ( medoid)	16.0998	8.07464	16.9603	130
cluster_3.pdb ( medoid)	10.9654	8.29881	21.6459	91
cluster_4.pdb ( medoid)	10.2113	9.79303	21.1655	100
cluster_5.pdb ( medoid)	9.52719	9.44665	20.7395	90
cluster_6.pdb ( medoid)	9.22521	8.78029	18.4597	81
cluster_7.pdb ( medoid)	8.74229	10.8667	21.0519	95
cluster_8.pdb ( medoid)	8.65361	11.9025	25.9914	103
cluster_9.pdb ( medoid)	5.61424	11.9339	26.3419	67
cluster_10.pdb ( medoid)	5.54225	13.352	29.1733	74