CABS-dock: e1821fa3a9e8375

Project name: e1821fa3a9e8375

Status: done

submitted: 2026-06-13 10:29:08, status changed: 2026-06-13 13:22:03

Project settings

Protein sequence(s)	GQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSS input pdb
Peptide sequence	KTNMKHMAGAAAAGAVVGGLG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHHHHHHHHHHHCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.7194	5.68652	23.0755	169
cluster_2.pdb ( medoid)	24.9458	4.65008	12.406	116
cluster_3.pdb ( medoid)	22.0602	9.2021	27.6671	203
cluster_4.pdb ( medoid)	15.0802	6.23335	18.1735	94
cluster_5.pdb ( medoid)	14.9142	6.83914	16.3526	102
cluster_6.pdb ( medoid)	10.9676	9.66487	28.4225	106
cluster_7.pdb ( medoid)	7.04915	9.07911	28.2315	64
cluster_8.pdb ( medoid)	6.31699	9.97311	25.8425	63
cluster_9.pdb ( medoid)	6.07978	9.04639	21.1702	55
cluster_10.pdb ( medoid)	4.47549	6.2563	29.3944	28