CABS-dock: e2a20e3b003d214

Project name: e2a20e3b003d214

Status: done

submitted: 2026-02-26 16:00:16, status changed: 2026-02-26 18:47:43

Project settings

Protein sequence(s)	SRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWMLNPEGG input pdb
Peptide sequence	GRKKRRQRRRPPALMLSPAAIAQWFTAA
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHCCCCCHHHCCHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	42.0921	3.42107	11.1139	144
cluster_2.pdb ( medoid)	26.0434	8.17865	23.635	213
cluster_3.pdb ( medoid)	20.619	4.4619	17.1679	92
cluster_4.pdb ( medoid)	15.6663	7.85124	24.371	123
cluster_5.pdb ( medoid)	11.8409	8.10746	27.1719	96
cluster_6.pdb ( medoid)	9.08382	5.83455	10.3296	53
cluster_7.pdb ( medoid)	8.69543	12.6503	23.6386	110
cluster_8.pdb ( medoid)	7.47731	12.4376	28.6106	93
cluster_9.pdb ( medoid)	5.22261	8.23343	15.6606	43
cluster_10.pdb ( medoid)	2.10219	15.6979	26.924	33