CABS-dock: e35961edeec1f79

Project name: e35961edeec1f79

Status: done

submitted: 2025-02-05 02:34:07, status changed: 2025-02-05 12:50:19

Project settings

Protein sequence(s)	EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFGGYRARPAKAAATDTRPRFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTSPLTVEWRA input pdb
Peptide sequence	VVEVAPVEPTPVAPQ
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEECCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	38.9179	2.69799	13.097	105
cluster_2.pdb ( medoid)	27.177	6.32888	18.5021	172
cluster_3.pdb ( medoid)	20.5176	5.21504	24.9071	107
cluster_4.pdb ( medoid)	19.2655	11.3675	26.0823	219
cluster_5.pdb ( medoid)	16.6083	7.28552	22.471	121
cluster_6.pdb ( medoid)	8.30911	10.8315	21.7549	90
cluster_7.pdb ( medoid)	7.2772	10.1687	23.0052	74
cluster_8.pdb ( medoid)	3.89719	11.2902	22.6215	44
cluster_9.pdb ( medoid)	3.65231	11.2258	22.0457	41
cluster_10.pdb ( medoid)	2.38755	11.3087	26.6308	27