CABS-dock: e42ea4dc187807f

Project name: e42ea4dc187807f

Status: done

submitted: 2026-01-12 04:14:30, status changed: 2026-01-12 09:34:36

Project settings

Protein sequence(s)	MLILKGTKTVDLSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSSNVVFVIAAAESSLPFELKNIADSIISILFPWGTLLEYVIKPNRRDILSSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRRIDDVKELDNEYVKQFNSLWAKRLAFGRKRSFFRVSGHVSKH input pdb
Peptide sequence	KENLFDISKKII
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCHHHCHHCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	95.8465	0.563401	1.04552	54
cluster_2.pdb ( medoid)	39.5261	3.36487	14.2459	133
cluster_3.pdb ( medoid)	33.0331	3.29972	21.963	109
cluster_4.pdb ( medoid)	28.5169	5.75098	18.9825	164
cluster_5.pdb ( medoid)	21.6941	6.45338	20.5353	140
cluster_6.pdb ( medoid)	17.4344	4.53128	12.8056	79
cluster_7.pdb ( medoid)	16.3186	8.57919	36.4587	140
cluster_8.pdb ( medoid)	14.146	6.29152	12.7668	89
cluster_9.pdb ( medoid)	7.73448	9.95542	31.2825	77
cluster_10.pdb ( medoid)	1.26217	11.8843	26.8572	15