CABS-dock: peptido

Project name: peptido_1.1

Status: done

submitted: 2026-07-16 03:42:00, status changed: 2026-07-16 07:46:37

Project settings

Protein sequence(s)

MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA input pdb

Peptide sequence

EELRRLLA

Simulation mc cycles

Peptide secondary structure psipred

CHHHHHHC

Unlikely to bind regions

1:X - 182:X

220:X - 283:X

213:X - 217:X

192:X - 208:X

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.4893	4.18344	24.2744	115
cluster_2.pdb ( medoid)	24.651	8.27552	36.7644	204
cluster_3.pdb ( medoid)	17.2826	7.52203	17.3903	130
cluster_4.pdb ( medoid)	16.5269	7.2609	28.5414	120
cluster_5.pdb ( medoid)	10.0183	10.2812	31.3552	103
cluster_6.pdb ( medoid)	9.79728	8.16553	20.2626	80
cluster_7.pdb ( medoid)	9.25425	7.78021	26.0698	72
cluster_8.pdb ( medoid)	6.50766	7.68325	18.3031	50
cluster_9.pdb ( medoid)	6.0953	7.05462	17.1786	43
cluster_10.pdb ( medoid)	5.83315	14.229	40.9987	83