CABS-dock: CABS-dock

Project name: CABS-dock

Status: done

submitted: 2026-03-12 09:26:49, status changed: 2026-03-12 14:57:21

Project settings

Protein sequence(s)	GEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAINPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQDQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKAI input pdb
Peptide sequence	RHPHPRLSFMAIPPKK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCEECCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	36.381	3.46335	14.9744	126
cluster_2.pdb ( medoid)	26.1213	7.88628	36.6584	206
cluster_3.pdb ( medoid)	22.9462	5.49111	20.754	126
cluster_4.pdb ( medoid)	18.1175	6.12669	39.6644	111
cluster_5.pdb ( medoid)	15.9131	6.72403	17.8725	107
cluster_6.pdb ( medoid)	11.7927	10.2606	42.9029	121
cluster_7.pdb ( medoid)	8.55301	9.00268	44.3225	77
cluster_8.pdb ( medoid)	7.26332	5.23176	10.4496	38
cluster_9.pdb ( medoid)	5.78952	7.42721	22.7888	43
cluster_10.pdb ( medoid)	2.1971	20.4816	44.6769	45