CABS-dock: e577d253362af50

Project name: e577d253362af50

Status: done

submitted: 2025-04-19 05:25:39, status changed: 2025-04-19 13:42:09

Project settings

Protein sequence(s)	GSHSLRYFHTAVSRPGLREPLFITVGYVDDTQFVRFDSDARDPRTEPRQPWMEKEGPEYWDRETQISKENALWYREALNNLRGYYNQSEAGSHTLQEMYGCDVGSDGRLRRGYEQYGYDGRDYLALNEDLRSWTAADTAAQISKRKMEAAGAAERFRNYLEGTCVEWLRRYLENGKDTLLRADPPKAHVTRHPSSEHEVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRPSGDGNFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEPGVGYPKVKEEMLAIQRPPKIQVYSRHPPEDGKPNYLNCYVYGFHPPQIEIDLLKNGEKIKSEQSDLSFSKDWSFYLLSHAEFTPNSKDQYSCRVKHVTLEQPRIVKWDRDL input pdb
Peptide sequence	RLSARIKIL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCEEEC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	94.0499	1.0739	24.1339	101
cluster_2.pdb ( medoid)	78.6348	1.53876	12.9233	121
cluster_3.pdb ( medoid)	22.7415	8.44272	46.4215	192
cluster_4.pdb ( medoid)	19.0772	9.01601	37.7914	172
cluster_5.pdb ( medoid)	17.7166	3.16087	5.95682	56
cluster_6.pdb ( medoid)	16.0766	7.21548	39.0562	116
cluster_7.pdb ( medoid)	8.80024	7.95433	28.8058	70
cluster_8.pdb ( medoid)	7.83341	5.99994	28.9023	47
cluster_9.pdb ( medoid)	7.72369	12.2998	26.2105	95
cluster_10.pdb ( medoid)	7.61144	3.94144	18.7493	30