CABS-dock: e5f9cbd867c14ce

Project name: e5f9cbd867c14ce

Status: done

submitted: 2026-07-01 10:13:28, status changed: 2026-07-01 13:11:08

Project settings

Protein sequence(s)	LATDKDKLSYSIGADLGKNFKNQGIDVNPEAMAKGMQDAMSGAQLALTEQQMKDVLNKFQKDLMAKRTAEFNKKADENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK input pdb
Peptide sequence	DGYSLV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	63.7498	2.85491	10.2864	182
cluster_2.pdb ( medoid)	33.1749	2.98418	8.08531	99
cluster_3.pdb ( medoid)	28.0561	6.87908	37.0805	193
cluster_4.pdb ( medoid)	16.4977	8.72848	30.4577	144
cluster_5.pdb ( medoid)	14.479	5.45617	22.9414	79
cluster_6.pdb ( medoid)	10.3362	6.67556	23.5542	69
cluster_7.pdb ( medoid)	9.26641	8.63333	19.3569	80
cluster_8.pdb ( medoid)	8.55082	5.3796	9.9786	46
cluster_9.pdb ( medoid)	4.82283	9.33063	31.9056	45
cluster_10.pdb ( medoid)	4.08045	15.4395	45.5241	63