CABS-dock: SHTNSQYQSS-YW

Project name: SHTNSQYQSS-YW

Status: done

submitted: 2026-07-23 08:49:16, status changed: 2026-07-23 12:58:35

Project settings

Protein sequence(s)	GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS input pdb
Peptide sequence	SHTNSQYQSS
Simulation mc cycles	100
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.3337	3.64282	14.0087	136
cluster_2.pdb ( medoid)	37.1371	4.57764	13.9042	170
cluster_3.pdb ( medoid)	23.1397	6.09344	19.7076	141
cluster_4.pdb ( medoid)	16.6747	5.87718	16.7079	98
cluster_5.pdb ( medoid)	15.7719	7.73527	20.3371	122
cluster_6.pdb ( medoid)	12.7439	6.90526	26.7964	88
cluster_7.pdb ( medoid)	10.1327	8.98083	32.2697	91
cluster_8.pdb ( medoid)	10.0384	6.2759	13.3691	63
cluster_9.pdb ( medoid)	3.1365	14.666	37.048	46
cluster_10.pdb ( medoid)	3.08793	14.5729	29.0007	45