CABS-dock: e6d3e6d47e7573c

Project name: e6d3e6d47e7573c

Status: done

submitted: 2026-06-02 11:07:18, status changed: 2026-06-02 17:52:56

Project settings

Protein sequence(s)	DHCPLGPGRCCRLHTVRASLEDLGWADWVLSPREVQVTMCIGACPSQFRAANMHAQIKTSLHRLKPDTVPAPCCVPASYNPMVLIQKTDTGVSLQTYDDLLAKDCHCIWSCLEVAEACVGDVVCNAQLASYLKACSANGNPCDLKQCQAAIRFFYQNIPFNIAQMLAFCDCAQSDIPCQQSKEALHSKTCAVNMVPPPTCLSVIRSCQNDELCRRHYRTFQSKCWQRVTRKCHEDENCISTLSKQDLTCSGSDDCKAAYIDILGTVLQVQCTCRTITQSEESLCKIFQHMLHRKSCFN input pdb
Peptide sequence	VPASYNPMVLIQKTDTGVSLQT
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCEEEEEECCCCEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	24.8776	4.26087	9.17161	106
cluster_2.pdb ( medoid)	23.0511	9.11019	37.652	210
cluster_3.pdb ( medoid)	20.445	5.62485	35.0312	115
cluster_4.pdb ( medoid)	16.3112	7.1117	19.9368	116
cluster_5.pdb ( medoid)	9.97308	11.6313	35.2979	116
cluster_6.pdb ( medoid)	9.75842	8.30053	29.152	81
cluster_7.pdb ( medoid)	6.51316	13.5111	28.7451	88
cluster_8.pdb ( medoid)	5.61575	11.5746	40.7892	65
cluster_9.pdb ( medoid)	4.57408	9.61942	22.9224	44
cluster_10.pdb ( medoid)	3.53426	16.6937	37.8913	59