CABS-dock: e852935fe4eec06

Project name: e852935fe4eec06

Status: done

submitted: 2026-07-23 10:36:37, status changed: 2026-07-23 12:30:06

Project settings

Protein sequence(s)	APYGARMPFGGQVPLGAPPPFPTWPGCPQPPPLHAWQAGTPPPPSPQPAAFPQSLPFPQSPAFPTASPAPPQSPGLQPLIIHHAQMVQLGLNNHMWNQRGSQAPEDKTQEAE input pdb
Peptide sequence	RRVIVVQCGFSNCR
Simulation mc cycles	50
Peptide secondary structure psipred	CEEEEEECCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	20.0717	6.57642	38.6673	132
cluster_2.pdb ( medoid)	13.6522	9.81526	36.6766	134
cluster_3.pdb ( medoid)	12.0437	13.2019	38.6701	159
cluster_4.pdb ( medoid)	8.16263	10.2908	37.7737	84
cluster_5.pdb ( medoid)	8.00739	14.7364	53.3252	118
cluster_6.pdb ( medoid)	7.46536	9.91245	30.7742	74
cluster_7.pdb ( medoid)	6.50768	15.5201	37.4954	101
cluster_8.pdb ( medoid)	4.2341	21.256	52.0078	90
cluster_9.pdb ( medoid)	3.45151	14.1967	35.545	49
cluster_10.pdb ( medoid)	2.97011	19.8646	47.8701	59