CABS-dock: e8daf707e316ad3

Project name: e8daf707e316ad3

Status: done

submitted: 2025-12-29 08:16:55, status changed: 2025-12-29 11:41:18

Project settings

Protein sequence(s)	MVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGATMVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGAT input pdb
Peptide sequence	LPPTDESIKYTIYNSTGIQIGAYNYMEIGG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCEEEECCCCEEECCCCEECCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	21.5779	4.72707	23.4714	102
cluster_2.pdb ( medoid)	18.472	5.63015	29.8344	104
cluster_3.pdb ( medoid)	17.4941	10.7465	29.6595	188
cluster_4.pdb ( medoid)	15.4065	8.69762	30.8712	134
cluster_5.pdb ( medoid)	14.5527	7.07774	27.9487	103
cluster_6.pdb ( medoid)	10.757	7.62293	27.4952	82
cluster_7.pdb ( medoid)	9.13002	13.6911	29.7902	125
cluster_8.pdb ( medoid)	8.24234	7.27949	24.5009	60
cluster_9.pdb ( medoid)	5.83348	10.2855	27.2352	60
cluster_10.pdb ( medoid)	5.5903	7.51302	23.1104	42