CABS-dock: 2-3c7e839b185bbaf

Project name: 2-3c7e839b185bbaf

Status: done

submitted: 2026-07-08 07:48:42, status changed: 2026-07-08 16:44:26

Project settings

Protein sequence(s)	SCPSLIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFSIEGGTRSSCPSLIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFSIEG input pdb
Peptide sequence	DGEA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	30.1613	3.38182	26.0103	102
cluster_2.pdb ( medoid)	20.8036	6.1047	26.6303	127
cluster_3.pdb ( medoid)	20.0459	8.03157	40.8024	161
cluster_4.pdb ( medoid)	18.6771	5.35414	18.8999	100
cluster_5.pdb ( medoid)	12.6723	11.679	33.798	148
cluster_6.pdb ( medoid)	11.2747	6.91817	31.4649	78
cluster_7.pdb ( medoid)	8.63801	8.56678	26.7504	74
cluster_8.pdb ( medoid)	5.7281	16.5849	45.516	95
cluster_9.pdb ( medoid)	3.99232	19.0365	42.8504	76
cluster_10.pdb ( medoid)	2.58931	15.0619	37.9693	39