CABS-dock: e97fab0fa953f1d

Project name: e97fab0fa953f1d

Status: done

submitted: 2026-06-13 16:29:54, status changed: 2026-06-13 21:34:37

Project settings

Protein sequence(s)	QRHVRIGIIGGGPAGLTAGIYASRANLKTCVFVGIEHTSQMFTTTDVENFPSHTAIKGPALMEAIQNQAEHCGAELLYEDVHSIDVSSRPFKIVHGYENETTLADALIIATGATARRLDCKGEKEYWQKGVSACAVCDSAMATGKEVVVVGGGDVACEEATYLTKIATKVYMVLRRDKFRASAAMVKKVMNEKLIEIIYDSAIDEIKGDGKCVTSVSIKNLKDGKTRTLNAGALYWAVGHDPQTSFLKKGQLEQDEAGYILLKDHPTQRTSVDGVFAAGDCCDHLYRQAVVAAGSGSKAALDAERWLAM input pdb
Peptide sequence	RRWWFR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	56.8453	2.88503	29.7127	164
cluster_2.pdb ( medoid)	46.8272	3.60901	12.1779	169
cluster_3.pdb ( medoid)	28.4074	4.64668	35.6313	132
cluster_4.pdb ( medoid)	24.2234	8.09134	30.8073	196
cluster_5.pdb ( medoid)	17.4275	7.63163	17.5508	133
cluster_6.pdb ( medoid)	13.8374	4.55289	9.81493	63
cluster_7.pdb ( medoid)	7.79233	2.56663	11.0012	20
cluster_8.pdb ( medoid)	7.69963	4.67555	11.251	36
cluster_9.pdb ( medoid)	7.24205	5.10905	10.9886	37
cluster_10.pdb ( medoid)	3.67622	13.6009	29.3292	50