CABS-dock: 1j4m

Project name: 1j4m

Status: done

submitted: 2025-12-12 13:27:28, status changed: 2025-12-12 16:59:28

Project settings

Protein sequence(s)	SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHK input pdb
Peptide sequence	RGKWTYNGITYEGR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEECCCEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	28.5418	3.67882	26.5126	105
cluster_2.pdb ( medoid)	23.7645	5.51242	19.6002	131
cluster_3.pdb ( medoid)	15.7492	8.38137	20.6194	132
cluster_4.pdb ( medoid)	12.8688	8.62554	19.0865	111
cluster_5.pdb ( medoid)	11.4537	12.1358	30.277	139
cluster_6.pdb ( medoid)	9.34037	10.1709	23.3545	95
cluster_7.pdb ( medoid)	8.83267	10.8687	25.8589	96
cluster_8.pdb ( medoid)	7.94347	12.2113	23.3139	97
cluster_9.pdb ( medoid)	7.50603	9.85874	26.0604	74
cluster_10.pdb ( medoid)	1.7106	11.6918	19.8859	20