CABS-dock: e9e00f0dba120e5

Project name: e9e00f0dba120e5

Status: done

submitted: 2026-03-19 06:14:27, status changed: 2026-03-19 21:05:19

Project settings

Protein sequence(s)	GQPFHVKYREIIRRMSFLIGALLVFRLGAHIPVPGINNAALENLFHANQGTILGLFNMFSGGALERMSILALGIMPYISASIIVQLMSTVIPSLEALKKEGEQGKRKINQYTRQGTLLLAVVQAVGMCAGLIGQGITLSSGLAFYIPAVTSLVAGTMFLMWLGEQITERGIGNGISMIIFAGIVAGLPKLIMQSVSSVDNGQTSLIGLVIFGLLSLGVLAAIVFIEKAQRRIPVNYAQTHLPLKINMAGVIPAIFASSLLLFPASLGQWVGGLIKRSLQDLALVLSPGQPLYLVLFGALIIFFCYFYTALVFSPKEVSENLKRSGAYVPGIRPGEQTARYLDHILNRLTFIGAIYITVICLMPMILQSSFGIPFYLGGTSLLIVVVVVMDFMAQLQAHLTSHQYDNQTLMRKTTA input pdb
Peptide sequence	VGGLFYFNYPSGTGLVSGAVFGRLAGRGAA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCHHHHHHHCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	32.0099	6.49798	25.9029	208
cluster_2.pdb ( medoid)	30.477	3.34678	12.7739	102
cluster_3.pdb ( medoid)	27.4996	3.63642	6.42958	100
cluster_4.pdb ( medoid)	12.8008	6.56208	16.4293	84
cluster_5.pdb ( medoid)	11.1335	9.88011	19.3371	110
cluster_6.pdb ( medoid)	8.33352	8.27981	18.0599	69
cluster_7.pdb ( medoid)	7.36029	8.28772	25.0907	61
cluster_8.pdb ( medoid)	6.6962	10.603	18.7072	71
cluster_9.pdb ( medoid)	6.65057	9.92396	18.3562	66
cluster_10.pdb ( medoid)	4.73872	6.11979	15.9324	29