CABS-dock: ea135a08ef5a94a

Project name: ea135a08ef5a94a

Status: done

submitted: 2026-01-16 19:50:54, status changed: 2026-01-17 03:28:53

Project settings

Protein sequence(s)	IVGGWECEKHSQPWQVAVYSHGWAHCGGVLVHPQWVLTAAHCLKKNSQVWLGRHNLFEPEDTGQRVPVSHSFPHPLYNMSLDSSHDLMLLRLSEPAKITDVVKVLGLPTQEPALGTTCYASGWGSIEPEEFLRPRSLQCVSLHLLSNDMCARAYSEKVTEFMLCAGLWTGGKDTCGGDSGGPLVCNGVLQGITSWGPEPCALPEKPAVYTKVVHYRKWIKDTIAANP input pdb
Peptide sequence	CAARFKVWWAAC
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEEEEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.5648	4.66798	25.5466	110
cluster_2.pdb ( medoid)	22.1882	7.39131	30.8795	164
cluster_3.pdb ( medoid)	21.7006	6.49753	45.6948	141
cluster_4.pdb ( medoid)	19.4355	6.79171	33.9348	132
cluster_5.pdb ( medoid)	19.0717	5.08606	20.9213	97
cluster_6.pdb ( medoid)	16.9913	4.0609	36.4323	69
cluster_7.pdb ( medoid)	14.7565	6.57338	32.5803	97
cluster_8.pdb ( medoid)	12.8385	2.88196	19.3651	37
cluster_9.pdb ( medoid)	8.90676	11.0029	42.8265	98
cluster_10.pdb ( medoid)	5.8634	9.38023	26.7831	55