CABS-dock: ebb303f23122752

Project name: ebb303f23122752

Status: done

submitted: 2025-12-26 01:02:13, status changed: 2025-12-26 05:10:32

Project settings

Protein sequence(s)	GPTQSFFMRESKTLGAVQIMNGLFHIALGGLLMIPAGIYAPICVTVWYPLWGGIMYIISGSLLAATEKNSRKCLVKGKMIMNSLSLFAAISGMILSIMDILNIKISHFLKMESLNFIRAHTPYINIYNCEPANPSEKNSPSTQYCYSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKRTCSR input pdb
Peptide sequence	MTCRASSSVNYMDW
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	30.9509	4.42637	29.0207	137
cluster_2.pdb ( medoid)	24.3404	3.65648	14.6531	89
cluster_3.pdb ( medoid)	22.3527	5.7711	25.5797	129
cluster_4.pdb ( medoid)	17.0019	8.46966	22.7645	144
cluster_5.pdb ( medoid)	14.0243	9.05568	21.8849	127
cluster_6.pdb ( medoid)	13.9525	8.0989	20.4791	113
cluster_7.pdb ( medoid)	9.80137	10.4067	45.6505	102
cluster_8.pdb ( medoid)	7.93205	7.43818	31.3285	59
cluster_9.pdb ( medoid)	5.12258	9.95591	26.1654	51
cluster_10.pdb ( medoid)	3.24147	15.1166	33.3747	49