CABS-dock: ec663a5ed85c7bc

Project name: ec663a5ed85c7bc

Status: done

submitted: 2026-03-18 04:47:50, status changed: 2026-03-18 08:27:38

Project settings

Protein sequence(s)	MAREENVYMAKLAEQAERYEEMVQFMEKVSTSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVKCIKEYRSKIESELSNICDGILKLLDSNLIPSASNGDSKVFYLKMKGDYHRYLAEFTTGAERKEAAESTLSAYKAAQDIANTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKETKPDNEQQ input pdb
Peptide sequence	RGRFSPTRY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	68.6782	1.2231	7.97649	84
cluster_2.pdb ( medoid)	43.3737	2.60527	18.7867	113
cluster_3.pdb ( medoid)	39.8128	4.2951	15.1096	171
cluster_4.pdb ( medoid)	23.4935	4.80983	11.3466	113
cluster_5.pdb ( medoid)	20.5615	5.05801	10.4427	104
cluster_6.pdb ( medoid)	14.3581	5.7807	17.5329	83
cluster_7.pdb ( medoid)	13.2735	7.91049	19.2723	105
cluster_8.pdb ( medoid)	11.1382	11.7614	29.0818	131
cluster_9.pdb ( medoid)	8.2509	5.45395	15.4984	45
cluster_10.pdb ( medoid)	7.34145	6.94686	24.5071	51