CABS-dock: ee340cfea5663a9

Project name: ee340cfea5663a9

Status: done

submitted: 2026-01-14 18:19:35, status changed: 2026-01-15 05:21:45

Project settings

Protein sequence(s)	QIIPSNTTSPPTNSTSPPTNATAPAPSPTNTITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	ITGFEANNFGTLVRTNGEKQFDDMN
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCEEEECCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.5776	2.66116	5.13991	100
cluster_2.pdb ( medoid)	18.0926	5.25075	26.4111	95
cluster_3.pdb ( medoid)	15.7891	6.3335	13.689	100
cluster_4.pdb ( medoid)	15.0711	3.0522	5.83483	46
cluster_5.pdb ( medoid)	14.8339	2.08981	7.24995	31
cluster_6.pdb ( medoid)	10.9993	10.637	22.2778	117
cluster_7.pdb ( medoid)	4.21003	10.4512	25.4852	44
cluster_8.pdb ( medoid)	3.81865	6.8087	23.2366	26
cluster_9.pdb ( medoid)	2.12831	19.7339	35.2789	42
cluster_10.pdb ( medoid)	1.11035	23.4159	46.5563	26