CABS-dock: eea9e53c242327b

Project name: eea9e53c242327b

Status: done

submitted: 2026-03-19 10:57:43, status changed: 2026-03-19 13:17:14

Project settings

Protein sequence(s)	MVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGATMVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGAT input pdb
Peptide sequence	KRLVQVFGSNTYRLK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEECCCCCEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	20.3365	5.21231	15.3691	106
cluster_2.pdb ( medoid)	19.9397	4.96498	15.8934	99
cluster_3.pdb ( medoid)	18.8119	5.15632	11.8198	97
cluster_4.pdb ( medoid)	18.4193	8.08934	22.1227	149
cluster_5.pdb ( medoid)	18.1529	5.61895	18.7752	102
cluster_6.pdb ( medoid)	13.9503	8.9604	23.2737	125
cluster_7.pdb ( medoid)	12.407	10.5585	21.0918	131
cluster_8.pdb ( medoid)	9.37817	8.74371	20.7442	82
cluster_9.pdb ( medoid)	7.48064	5.6145	12.9848	42
cluster_10.pdb ( medoid)	7.21694	9.28371	16.931	67