CABS-dock: ef0e885566ccad3

Project name: ef0e885566ccad3

Status: done

submitted: 2026-01-23 11:59:54, status changed: 2026-01-23 21:41:36

Project settings

Protein sequence(s)	ITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPN input pdb
Peptide sequence	SGTGSVSDTAGSTEQAGKINVVKDT
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCCEEEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	26.519	4.41193	19.9233	117
cluster_2.pdb ( medoid)	20.4693	6.15557	31.7976	126
cluster_3.pdb ( medoid)	15.4925	3.87285	11.3659	60
cluster_4.pdb ( medoid)	12.654	2.52885	8.71095	32
cluster_5.pdb ( medoid)	10.5153	8.93932	28.4146	94
cluster_6.pdb ( medoid)	8.46187	3.66349	9.98032	31
cluster_7.pdb ( medoid)	7.79724	8.46454	33.1996	66
cluster_8.pdb ( medoid)	7.32535	12.8322	32.7826	94
cluster_9.pdb ( medoid)	3.33953	15.2716	33.2564	51
cluster_10.pdb ( medoid)	2.40887	14.1145	29.22	34