CABS-dock: ef1584e3c20ac78

Project name: ef1584e3c20ac78

Status: done

submitted: 2026-03-12 09:21:48, status changed: 2026-03-12 20:36:51

Project settings

Protein sequence(s)	GEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAINPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQDQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKAI input pdb
Peptide sequence	RHPHPHLSFMAIPPKK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCEECCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	32.757	7.66248	32.4904	251
cluster_2.pdb ( medoid)	30.4378	2.79258	20.2522	85
cluster_3.pdb ( medoid)	24.6398	4.789	36.7666	118
cluster_4.pdb ( medoid)	22.4345	4.90317	32.8716	110
cluster_5.pdb ( medoid)	11.9164	14.266	49.9634	170
cluster_6.pdb ( medoid)	10.1481	9.45993	41.1033	96
cluster_7.pdb ( medoid)	6.62801	5.73325	10.5415	38
cluster_8.pdb ( medoid)	6.01483	7.48151	18.7139	45
cluster_9.pdb ( medoid)	3.95709	13.3937	38.5268	53
cluster_10.pdb ( medoid)	1.5319	22.1947	41.1135	34