CABS-dock: efb25dcc41d0f5d

Project name: efb25dcc41d0f5d

Status: done

submitted: 2026-01-12 09:18:53, status changed: 2026-01-12 11:52:28

Project settings

Protein sequence(s)	MVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGATMVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGAT input pdb
Peptide sequence	NSWISIANSEAIQIGHGNIITRQTV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEEECCCEEEECCCCEEEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.5107	3.3886	7.88626	100
cluster_2.pdb ( medoid)	23.322	4.88808	24.3949	114
cluster_3.pdb ( medoid)	21.3858	4.676	11.7483	100
cluster_4.pdb ( medoid)	19.509	7.68876	20.1628	150
cluster_5.pdb ( medoid)	15.6865	12.3036	25.3914	193
cluster_6.pdb ( medoid)	13.2849	7.82842	23.9534	104
cluster_7.pdb ( medoid)	11.6056	8.5304	17.1245	99
cluster_8.pdb ( medoid)	8.80149	12.4979	23.1675	110
cluster_9.pdb ( medoid)	1.94747	11.8102	23.0654	23
cluster_10.pdb ( medoid)	0.621119	11.27	21.8259	7