CABS-dock: Fc-nature-23

Project name: Fc-nature-23

Status: done

submitted: 2026-05-08 16:21:29, status changed: 2026-05-08 19:21:59

Project settings

Protein sequence(s)	HMVHITLDPDTANPWLILSEDRRQVRLGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVDVTGKEAWDLGVCRDSVRRKGHFLLSSKSGFWTIWLWNKQKYEAGTYPQTPLHLQVPPCQVGIFLDYEAGMVSFYNITDHGSLIYSFSECAFTGPLRPFFSPGFNDGGKNTAPLTLCPL input pdb
Peptide sequence	EALH
Simulation mc cycles	50
Peptide secondary structure psipred	CCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	40.3419	2.25572	11.7366	91
cluster_2.pdb ( medoid)	38.9727	5.36272	26.4605	209
cluster_3.pdb ( medoid)	15.1774	7.11583	25.5847	108
cluster_4.pdb ( medoid)	14.9592	5.94951	30.5188	89
cluster_5.pdb ( medoid)	12.9618	11.7267	51.4584	152
cluster_6.pdb ( medoid)	9.63147	11.4209	43.4244	110
cluster_7.pdb ( medoid)	6.92506	11.119	42.6646	77
cluster_8.pdb ( medoid)	6.75679	5.62397	16.5981	38
cluster_9.pdb ( medoid)	5.24915	10.8589	35.9345	57
cluster_10.pdb ( medoid)	3.48892	14.3311	43.7008	50